visad

Class Set

java.lang.Object

visad.ThingImpl

visad.DataImpl

visad.Set

All Implemented Interfaces:

Serializable, Cloneable, Data, SetIface, Thing

Direct Known Subclasses:

SimpleSet

public abstract class Set
extends DataImpl
implements SetIface

Set is the abstract superclass of the VisAD hierarchy of sets.

Set-s are subsets of R^n for n>0. For the most part, Set objects are immutable (but see SampledSet.getSamples(boolean)).

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class visad.DataImpl

DataImpl.Syncher

Field Summary

Fields inherited from interface visad.Data

ABS, ACOS, ACOS_DEGREES, ADD, ASIN, ASIN_DEGREES, ATAN, ATAN_DEGREES, ATAN2, ATAN2_DEGREES, CEIL, COS, COS_DEGREES, DEGREES_TO_RADIANS, DEPENDENT, DIVIDE, EXP, FLOOR, INDEPENDENT, INV_ATAN2, INV_ATAN2_DEGREES, INV_DIVIDE, INV_POW, INV_REMAINDER, INV_SUBTRACT, LOG, MAX, MIN, MULTIPLY, NEAREST_NEIGHBOR, NEGATE, NO_ERRORS, NOP, POW, RADIANS_TO_DEGREES, REMAINDER, RINT, ROUND, SIN, SIN_DEGREES, SQRT, SUBTRACT, TAN, TAN_DEGREES, WEIGHTED_AVERAGE

Constructor Summary

Constructors

Constructor and Description
Set(MathType type) construct a Set object
Set(MathType type, CoordinateSystem coord_sys) Constructs a Set object with a non-default CoordinateSystem.
Set(MathType type, CoordinateSystem coord_sys, Unit[] units, ErrorEstimate[] errors) Constructs a Set object with a non-default CoordinateSystem, non-default Unit-s, and non-default errors.

Method Summary

Methods

Modifier and Type	Method and Description
Data	__getitem__(int index) for JPython
int	__len__() A wrapper around getLength for JPython.
void	addEqualsCache(Set set) add set to a cache of Set-s equal to this
void	addNotEqualsCache(Set set) add set to a cache of Set-s not equal to this
Object	clone() Clones this instance.
abstract Object	cloneButType(MathType type) copy this Set, but give it a new MathType; this is safe, since constructor checks consistency of DomainCoordinateSystem and SetUnits with Type
DataShadow	computeRanges(ShadowType type, DataShadow shadow) Recursive version of computeRanges(), called down through Data object tree.
DataShadow	computeRanges(ShadowType type, DataShadow shadow, double[][] ranges, boolean domain) this default does not set ranges - it is used by FloatSet and DoubleSet
static double[][]	copyDoubles(double[][] samples)
static float[][]	copyFloats(float[][] samples)
void	cram_missing(boolean[] range_select)
static float[][]	doubleToFloat(double[][] value)
int[]	doubleToIndex(double[][] value)
abstract boolean	equals(Object set) test for equality
boolean	equalUnitAndCS(Set set) test equality of SetUnits and DomainCoordinateSystem between this and set
static double[][]	floatToDouble(float[][] value)
CoordinateSystem	getCoordinateSystem() Gets the coordinate system of this domain set (DomainCoordinateSystem).
int	getDimension() get DomainDimension (i.e., this is a subset of R^DomainDimension)
double[][]	getDoubles() Returns an enumeration of the samples of the set in index order.
double[][]	getDoubles(boolean copy) Returns an enumeration of the samples of the set in index order.
int	getLength() get the number of samples
int	getManifoldDimension() for non-SimpleSet, ManifoldDimension = DomainDimension
int[][]	getNeighbors(int dimension) Returns the indexes of the neighboring points along a manifold dimesion for every point in the set.
void	getNeighbors(int[][] neighbors) Returns the indexes of the neighboring points for every point in the set.
void	getNeighbors(int[][] neighbors, float[][] weights)
float[][]	getSamples() return an enumeration of sample values in index order (i.e., not in getWedge order); the return array is organized as float[domain_dimension][number_of_samples]
float[][]	getSamples(boolean copy) Returns an enumeration of the samples of the set in index order.
ErrorEstimate[]	getSetErrors() Returns the error estimates of the values in the set.
Unit[]	getSetUnits() Returns the units of the values in the set.
int[]	getWedge() return an enumeration of sample indices in a spatially coherent order; this is useful for efficiency
double[][]	indexToDouble(int[] index) Returns an array of sample-point values corresponding to an array of sample-point indicies.
abstract float[][]	indexToValue(int[] index) return Set values corresponding to Set indices
String	longString()
String	longString(String pre)
static void	main(String[] args)
VisADGeometryArray	make1DGeometry(byte[][] color_values)
VisADGeometryArray	make2DGeometry(byte[][] color_values, boolean indexed)
VisADGeometryArray[]	make3DGeometry(byte[][] color_values)
VisADGeometryArray[][]	makeIsoLines(float[] intervals, float lowlimit, float highlimit, float base, float[] fieldValues, byte[][] color_values, boolean[] swap, boolean dash, boolean fill, ScalarMap[] smap, double[] scale, double label_size, boolean sphericalDisplayCS) return basic lines in array[0], fill-ins in array[1] and labels in array[2]
VisADGeometryArray	makeIsoSurface(float isolevel, float[] fieldValues, byte[][] color_values, boolean indexed)
VisADGeometryArray	makePointGeometry(byte[][] color_values)
Set	makeSpatial(SetType type, float[][] samples)
Set	merge1DSets(Set set) merge 1D sets; used for default animation set
boolean	testEqualsCache(Set set) test set against a cache of Set-s equal to this
boolean	testNotEqualsCache(Set set) test set against a cache of Set-s not equal to this
Data	unary(int op, MathType new_type, int sampling_mode, int error_mode) Pointwise unary operation applied to this.
int	unitAndCSHashCode() Returns the hash code of the units and coordinate-system.
abstract int[]	valueToIndex(float[][] value) return Set indices of Set values closest to value elements (return -1 for any value outside Set range)

Methods inherited from class visad.DataImpl

__add__, __add__, __div__, __div__, __mod__, __mod__, __mul__, __mul__, __neg__, __pow__, __pow__, __radd__, __rdiv__, __rmod__, __rmul__, __rpow__, __rsub__, __sub__, __sub__, abs, abs, acos, acos, acosDegrees, acosDegrees, add, add, adjustSamplingError, asin, asin, asinDegrees, asinDegrees, atan, atan, atan2, atan2, atan2Degrees, atan2Degrees, atanDegrees, atanDegrees, binary, binary, ceil, ceil, changeMathType, computeRanges, computeRanges, cos, cos, cosDegrees, cosDegrees, dataClone, divide, divide, exp, exp, floor, floor, getType, local, log, log, max, max, min, min, multiply, multiply, negate, negate, notifyReferences, pow, pow, remainder, remainder, rint, rint, round, round, sin, sin, sinDegrees, sinDegrees, sqrt, sqrt, subtract, subtract, tan, tan, tanDegrees, tanDegrees, toString, unary

Methods inherited from class visad.ThingImpl

addReference, removeReference

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface visad.Data

abs, abs, acos, acos, acosDegrees, acosDegrees, add, add, adjustSamplingError, asin, asin, asinDegrees, asinDegrees, atan, atan, atan2, atan2, atan2Degrees, atan2Degrees, atanDegrees, atanDegrees, binary, binary, ceil, ceil, changeMathType, computeRanges, computeRanges, cos, cos, cosDegrees, cosDegrees, dataClone, divide, divide, exp, exp, floor, floor, getType, isMissing, local, log, log, max, max, min, min, multiply, multiply, negate, negate, pow, pow, remainder, remainder, rint, rint, round, round, sin, sin, sinDegrees, sinDegrees, sqrt, sqrt, subtract, subtract, tan, tan, tanDegrees, tanDegrees, unary

Methods inherited from interface visad.Thing

addReference, removeReference

Constructor Detail

Set

public Set(MathType type)
    throws VisADException

construct a Set object

Throws:

VisADException

Set

public Set(MathType type,
   CoordinateSystem coord_sys)
    throws VisADException

Constructs a Set object with a non-default CoordinateSystem.

Parameters:

type - The type of the Set.

coord_sys - The CoordinateSystem associated with this Set.

Throws:

VisADException

Set

public Set(MathType type,
   CoordinateSystem coord_sys,
   Unit[] units,
   ErrorEstimate[] errors)
    throws VisADException

Constructs a Set object with a non-default CoordinateSystem, non-default Unit-s, and non-default errors. This is the most general constructor.

Parameters:

type - The MathType of the set. May be a RealType, a RealTupleType, or a SetType.

coord_sys - Optional coordinate system for the domain of the set. May be null, in which case the default coordinate system of the domain is used.

units - Optional units for the values. May be null, in which case the default units of the domain are used. If the ith element is non-null and the RealType of the corresponding domain component is an interval, then the unit that is actually used is units[i].getAbsoluteUnit().

errors - Error estimates. May be null. errors[i] is the error estimate for the i-th component and may be null.

Throws:

VisADException

Method Detail

getSetUnits

public Unit[] getSetUnits()

Returns the units of the values in the set. The units may differ from the default units of the underlying MathType but will be convertible with them.

Specified by:

getSetUnits in interface SetIface

Returns:

The units of the values in the set. Will not be null. RETURN_VALUE[i] is the unit of the i-th component and may be null.

getSetErrors

public ErrorEstimate[] getSetErrors()

Returns the error estimates of the values in the set.

Specified by:

getSetErrors in interface SetIface

Returns:

Error estimates for the set. Will not be null. RETURN_VALUE[i] is the error estimate for the i-th component and may be null.

getCoordinateSystem

public CoordinateSystem getCoordinateSystem()

Gets the coordinate system of this domain set (DomainCoordinateSystem).

Specified by:

getCoordinateSystem in interface SetIface

Returns:

The coordinate system of this domain set. This will be the coordinate system passed to the constructor if non-null; otherwise, the (default) coordinate system of the underlying RealTupleType (which may be null).

getDimension

public int getDimension()

get DomainDimension (i.e., this is a subset of R^DomainDimension)

Specified by:

getDimension in interface SetIface

Returns:

The rank of the samples in the set.

getManifoldDimension

public int getManifoldDimension()

for non-SimpleSet, ManifoldDimension = DomainDimension

Specified by:

getManifoldDimension in interface SetIface

Returns:

The rank of the manifold of the set.

getLength

public int getLength()
              throws VisADException

get the number of samples

Specified by:

getLength in interface SetIface

Returns:

The number of samples in the set.

Throws:

VisADException

__len__

public int __len__()
            throws VisADException

A wrapper around getLength for JPython.

Returns:

The number of elements in the Set

Throws:

VisADException

getWedge

public int[] getWedge()

return an enumeration of sample indices in a spatially coherent order; this is useful for efficiency

Specified by:

getWedge in interface SetIface

Returns:

Indices of the samples of the set in a zig- zagging pattern with good coherence.

getSamples

public float[][] getSamples()
                     throws VisADException

return an enumeration of sample values in index order (i.e., not in getWedge order); the return array is organized as float[domain_dimension][number_of_samples]

Specified by:

getSamples in interface SetIface

Returns:

An enumeration of the samples of the set. Element [i][j] is the i-th coordinate of the j-th sample.

Throws:

VisADException - VisAD failure.

See Also:

SetIface.getSamples(boolean copy)

getSamples

public float[][] getSamples(boolean copy)
                     throws VisADException

Description copied from interface: SetIface

Returns an enumeration of the samples of the set in index order.

Specified by:

getSamples in interface SetIface

Parameters:

copy - Whether or not to make a copy of the samples of the set.

Returns:

An enumeration of the samples of the set. Element [i][j] is the i-th coordinate of the j-th sample.

Throws:

VisADException - VisAD failure.

getDoubles

public double[][] getDoubles()
                      throws VisADException

Description copied from interface: SetIface

Returns an enumeration of the samples of the set in index order. This is the same as getDoubles(true).

Specified by:

getDoubles in interface SetIface

Returns:

An enumeration of the samples of the set. Element [i][j] is the i-th coordinate of the j-th sample.

Throws:

VisADException - VisAD failure.

See Also:

SetIface.getDoubles(boolean copy)

getDoubles

public double[][] getDoubles(boolean copy)
                      throws VisADException

Description copied from interface: SetIface

Returns an enumeration of the samples of the set in index order.

Specified by:

getDoubles in interface SetIface

Parameters:

copy - Whether or not to make a copy of the samples of the set.

Returns:

An enumeration of the samples of the set. Element [i][j] is the i-th coordinate of the j-th sample.

Throws:

VisADException - VisAD failure.

cram_missing

public void cram_missing(boolean[] range_select)

Specified by:

cram_missing in interface SetIface

indexToValue

public abstract float[][] indexToValue(int[] index)
                                throws VisADException

return Set values corresponding to Set indices

Specified by:

indexToValue in interface SetIface

Parameters:

index - array of integer indices

Returns:

float[domain_dimension][indices.length] array of Set values

Throws:

VisADException - a VisAD error occurred

valueToIndex

public abstract int[] valueToIndex(float[][] value)
                            throws VisADException

return Set indices of Set values closest to value elements (return -1 for any value outside Set range)

Specified by:

valueToIndex in interface SetIface

Parameters:

value - float[domain_dimension][number_of_values] array of Set values

Returns:

array of integer indices

Throws:

VisADException - a VisAD error occurred

computeRanges

public DataShadow computeRanges(ShadowType type,
                       DataShadow shadow)
                         throws VisADException

Description copied from interface: Data

Recursive version of computeRanges(), called down through Data object tree.

Specified by:

computeRanges in interface Data

Parameters:

type - ShadowType generated for MathType of this

shadow - DataShadow instance whose contained double[][] array and animation sampling Set are modified according to RealType values in this, and used as return value

Returns:

DataShadow instance containing double[][] array of RealType ranges, and an animation sampling Set

Throws:

VisADException - a VisAD error occurred

computeRanges

public DataShadow computeRanges(ShadowType type,
                       DataShadow shadow,
                       double[][] ranges,
                       boolean domain)
                         throws VisADException

this default does not set ranges - it is used by FloatSet and DoubleSet

Throws:

VisADException

merge1DSets

public Set merge1DSets(Set set)
                throws VisADException

merge 1D sets; used for default animation set

Specified by:

merge1DSets in interface SetIface

Throws:

VisADException

makeSpatial

public Set makeSpatial(SetType type,
              float[][] samples)
                throws VisADException

Specified by:

makeSpatial in interface SetIface

Throws:

VisADException

make1DGeometry

public VisADGeometryArray make1DGeometry(byte[][] color_values)
                                  throws VisADException

Specified by:

make1DGeometry in interface SetIface

Throws:

VisADException

make2DGeometry

public VisADGeometryArray make2DGeometry(byte[][] color_values,
                                boolean indexed)
                                  throws VisADException

Specified by:

make2DGeometry in interface SetIface

Throws:

VisADException

make3DGeometry

public VisADGeometryArray[] make3DGeometry(byte[][] color_values)
                                    throws VisADException

Specified by:

make3DGeometry in interface SetIface

Throws:

VisADException

makePointGeometry

public VisADGeometryArray makePointGeometry(byte[][] color_values)
                                     throws VisADException

Specified by:

makePointGeometry in interface SetIface

Throws:

VisADException

makeIsoLines

public VisADGeometryArray[][] makeIsoLines(float[] intervals,
                                  float lowlimit,
                                  float highlimit,
                                  float base,
                                  float[] fieldValues,
                                  byte[][] color_values,
                                  boolean[] swap,
                                  boolean dash,
                                  boolean fill,
                                  ScalarMap[] smap,
                                  double[] scale,
                                  double label_size,
                                  boolean sphericalDisplayCS)
                                    throws VisADException

return basic lines in array[0], fill-ins in array[1] and labels in array[2]

Specified by:

makeIsoLines in interface SetIface

Throws:

VisADException

makeIsoSurface

public VisADGeometryArray makeIsoSurface(float isolevel,
                                float[] fieldValues,
                                byte[][] color_values,
                                boolean indexed)
                                  throws VisADException

Specified by:

makeIsoSurface in interface SetIface

Throws:

VisADException

indexToDouble

public double[][] indexToDouble(int[] index)
                         throws VisADException

Returns an array of sample-point values corresponding to an array of sample-point indicies.

Specified by:

indexToDouble in interface SetIface

Parameters:

index - The indicies of the sample points.

Returns:

A corresponding array of sample-point values. RETURN_VALUE[i][j] is the jth component of sample-point i.

Throws:

VisADException - if a VisAD failure occurs.

doubleToIndex

public int[] doubleToIndex(double[][] value)
                    throws VisADException

Specified by:

doubleToIndex in interface SetIface

Throws:

VisADException

floatToDouble

public static double[][] floatToDouble(float[][] value)

doubleToFloat

public static float[][] doubleToFloat(double[][] value)

copyFloats

public static float[][] copyFloats(float[][] samples)

copyDoubles

public static double[][] copyDoubles(double[][] samples)

getNeighbors

public void getNeighbors(int[][] neighbors)
                  throws VisADException

Returns the indexes of the neighboring points for every point in the set. neighbors.length should be at least getLength(). On return, neighbors[i][j] will be the index of the j -th neighboring point of point i. This method will allocate and set the array neighbors[i] for all i.

This implementation always throws an UnimplementedException.

Specified by:

getNeighbors in interface SetIface

Parameters:

neighbors - The array to contain the indexes of the neighboring points.

Throws:

NullPointerException - if the array is null.

ArrayIndexOutOfBoundsException - if neighbors.length < getLength() .

VisADException - if a VisAD failure occurs.

getNeighbors

public void getNeighbors(int[][] neighbors,
                float[][] weights)
                  throws VisADException

Specified by:

getNeighbors in interface SetIface

Throws:

VisADException

getNeighbors

public int[][] getNeighbors(int dimension)
                     throws VisADException

Returns the indexes of the neighboring points along a manifold dimesion for every point in the set. Elements [i][0] and [i][1] of the returned array are the indexes of the neighboring sample points in the direction of decreasing and increasing manifold index, respectively, for sample point i. If a sample point doesn't have a neighboring point (because it is an exterior point, for example) then the value of the corresponding index will be -1.

This implementation always throws an UnimplementedException.

Specified by:

getNeighbors in interface SetIface

Parameters:

dimension - The index of the manifold dimension along which to return the neighboring points.

Throws:

ArrayIndexOutOfBoundsException - if manifoldIndex < 0 || manifoldIndex >= getManifoldDimension() .

VisADException - if a VisAD failure occurs.

See Also:

getManifoldDimension()

testNotEqualsCache

public boolean testNotEqualsCache(Set set)

test set against a cache of Set-s not equal to this

addNotEqualsCache

public void addNotEqualsCache(Set set)

add set to a cache of Set-s not equal to this

testEqualsCache

public boolean testEqualsCache(Set set)

test set against a cache of Set-s equal to this

addEqualsCache

public void addEqualsCache(Set set)

add set to a cache of Set-s equal to this

equalUnitAndCS

public boolean equalUnitAndCS(Set set)

test equality of SetUnits and DomainCoordinateSystem between this and set

Specified by:

equalUnitAndCS in interface SetIface

unitAndCSHashCode

public int unitAndCSHashCode()

Returns the hash code of the units and coordinate-system. This is the hash code analogue of equalUnitAndCS(Set).

Returns:

The hash code of the units and coordinate system.

__getitem__

public Data __getitem__(int index)
                 throws VisADException,
                        RemoteException

for JPython

Throws:

VisADException

RemoteException

equals

public abstract boolean equals(Object set)

test for equality

Specified by:

equals in interface SetIface

Overrides:

equals in class Object

clone

public Object clone()

Clones this instance.

Overrides:

clone in class DataImpl

Returns:

A clone of this instance.

unary

public Data unary(int op,
         MathType new_type,
         int sampling_mode,
         int error_mode)
           throws VisADException,
                  RemoteException

Description copied from class: DataImpl

Pointwise unary operation applied to this. Applies to Reals, Tuples (recursively to components), and to Field ranges (Field domains implicitly resampled if necessary). Does not apply to Field domains, Sets (regarded as domains of Fields wthout ranges) or Text.

Specified by:

unary in interface Data

Overrides:

unary in class DataImpl

Parameters:

op - may be Data.ABS, Data.ACOS, etc; these include all unary operations defined for Java primitive data types

new_type - MathType of the result

sampling_mode - may be Data.NEAREST_NEIGHBOR or Data.WEIGHTED_AVERAGE

error_mode - may be Data.INDEPENDENT, Data.DEPENDENT or Data.NO_ERRORS;

Returns:

result, with MathType = new_type

Throws:

VisADException - a VisAD error occurred

RemoteException - an RMI error occurred

cloneButType

public abstract Object cloneButType(MathType type)
                             throws VisADException

copy this Set, but give it a new MathType; this is safe, since constructor checks consistency of DomainCoordinateSystem and SetUnits with Type

Specified by:

cloneButType in interface SetIface

Parameters:

type - The MathType for the clone.

Returns:

A clone of this set with the new MathType.

Throws:

VisADException - VisAD failure.

longString

public String longString()
                  throws VisADException

Specified by:

longString in interface Data

Overrides:

longString in class DataImpl

Returns:

a longer String than returned by toString()

Throws:

VisADException

longString

public String longString(String pre)
                  throws VisADException

Specified by:

longString in interface Data

Overrides:

longString in class DataImpl

Parameters:

pre - String added to start of each line

Returns:

a longer String than returned by toString(), indented by pre (a string of blanks)

Throws:

VisADException

main

public static void main(String[] args)
                 throws VisADException

Throws:

VisADException