edu.wisc.ssec.mcidasv.data.hydra

Class NetCDFFile

java.lang.Object

edu.wisc.ssec.mcidasv.data.hydra.NetCDFFile

All Implemented Interfaces:

MultiDimensionReader

public class NetCDFFile
extends java.lang.Object
implements MultiDimensionReader

Field Summary

Fields

Modifier and Type	Field and Description
private static org.slf4j.Logger	logger
(package private) ucar.nc2.NetcdfFile	ncfile
private java.util.Map<java.lang.String,java.lang.Class>	varDataType
private java.util.Map<java.lang.String,int[]>	varDimLengths
private java.util.Map<java.lang.String,java.lang.String[]>	varDimNames
private java.util.Map<java.lang.String,ucar.nc2.Variable>	varMap
private java.util.Map<java.lang.String,java.lang.String>	varUnits

Constructor Summary

Constructors

Constructor and Description
NetCDFFile(java.io.InputStream is)
NetCDFFile(java.lang.String filename)
NetCDFFile(java.lang.String filename, org.jdom2.Element root)

Method Summary

Modifier and Type	Method and Description
(package private) void	analyzeStructure(ucar.nc2.Structure var)
void	close()
java.lang.Object	getArray(java.lang.String array_name, int[] start, int[] count, int[] stride)
HDFArray	getArrayAttribute(java.lang.String array_name, java.lang.String attr_name)
java.lang.Class	getArrayType(java.lang.String array_name)
java.lang.String	getArrayUnitString(java.lang.String array_name)
byte[]	getByteArray(java.lang.String array_name, int[] start, int[] count, int[] stride)
int	getDimensionLength(java.lang.String dimName)
int[]	getDimensionLengths(java.lang.String array_name)
java.lang.String[]	getDimensionNames(java.lang.String array_name)
double[]	getDoubleArray(java.lang.String array_name, int[] start, int[] count, int[] stride)
float[]	getFloatArray(java.lang.String array_name, int[] start, int[] count, int[] stride)
HDFArray	getGlobalAttribute(java.lang.String attr_name)
int[]	getIntArray(java.lang.String array_name, int[] start, int[] count, int[] stride)
ucar.nc2.NetcdfFile	getNetCDFFile()
short[]	getShortArray(java.lang.String array_name, int[] start, int[] count, int[] stride)
java.util.Map<java.lang.String,ucar.nc2.Variable>	getVarMap()
boolean	hasArray(java.lang.String name)
boolean	hasDimension(java.lang.String name)
private void	init()
static void	main(java.lang.String[] args)
static NetCDFFile	makeUnion(java.lang.String filename, java.lang.String other)
protected java.lang.Object	readArray(java.lang.String array_name, int[] start, int[] count, int[] stride)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

private static final org.slf4j.Logger logger

varMap

private final java.util.Map<java.lang.String,ucar.nc2.Variable> varMap

varDimNames

private final java.util.Map<java.lang.String,java.lang.String[]> varDimNames

varDimLengths

private final java.util.Map<java.lang.String,int[]> varDimLengths

varDataType

private final java.util.Map<java.lang.String,java.lang.Class> varDataType

varUnits

private final java.util.Map<java.lang.String,java.lang.String> varUnits

ncfile

ucar.nc2.NetcdfFile ncfile

Constructor Detail

NetCDFFile

public NetCDFFile(java.io.InputStream is)
           throws java.lang.Exception

Throws:

java.lang.Exception

NetCDFFile

public NetCDFFile(java.lang.String filename)
           throws java.lang.Exception

Throws:

java.lang.Exception

NetCDFFile

public NetCDFFile(java.lang.String filename,
                  org.jdom2.Element root)
           throws java.lang.Exception

Throws:

java.lang.Exception

Method Detail

makeUnion

public static NetCDFFile makeUnion(java.lang.String filename,
                                   java.lang.String other)
                            throws java.lang.Exception

Throws:

java.lang.Exception

init

private void init()
           throws java.lang.Exception

Throws:

java.lang.Exception

analyzeStructure

void analyzeStructure(ucar.nc2.Structure var)
               throws java.lang.Exception

Throws:

java.lang.Exception

getArrayType

public java.lang.Class getArrayType(java.lang.String array_name)

Specified by:

getArrayType in interface MultiDimensionReader

getDimensionNames

public java.lang.String[] getDimensionNames(java.lang.String array_name)

Specified by:

getDimensionNames in interface MultiDimensionReader

getDimensionLengths

public int[] getDimensionLengths(java.lang.String array_name)

Specified by:

getDimensionLengths in interface MultiDimensionReader

getArrayUnitString

public java.lang.String getArrayUnitString(java.lang.String array_name)

getDimensionLength

public int getDimensionLength(java.lang.String dimName)

getFloatArray

public float[] getFloatArray(java.lang.String array_name,
                             int[] start,
                             int[] count,
                             int[] stride)
                      throws java.lang.Exception

Specified by:

getFloatArray in interface MultiDimensionReader

Throws:

java.lang.Exception

getIntArray

public int[] getIntArray(java.lang.String array_name,
                         int[] start,
                         int[] count,
                         int[] stride)
                  throws java.lang.Exception

Specified by:

getIntArray in interface MultiDimensionReader

Throws:

java.lang.Exception

getDoubleArray

public double[] getDoubleArray(java.lang.String array_name,
                               int[] start,
                               int[] count,
                               int[] stride)
                        throws java.lang.Exception

Specified by:

getDoubleArray in interface MultiDimensionReader

Throws:

java.lang.Exception

getShortArray

public short[] getShortArray(java.lang.String array_name,
                             int[] start,
                             int[] count,
                             int[] stride)
                      throws java.lang.Exception

Specified by:

getShortArray in interface MultiDimensionReader

Throws:

java.lang.Exception

getByteArray

public byte[] getByteArray(java.lang.String array_name,
                           int[] start,
                           int[] count,
                           int[] stride)
                    throws java.lang.Exception

Specified by:

getByteArray in interface MultiDimensionReader

Throws:

java.lang.Exception

getArray

public java.lang.Object getArray(java.lang.String array_name,
                                 int[] start,
                                 int[] count,
                                 int[] stride)
                          throws java.lang.Exception

Specified by:

getArray in interface MultiDimensionReader

Throws:

java.lang.Exception

readArray

protected java.lang.Object readArray(java.lang.String array_name,
                                     int[] start,
                                     int[] count,
                                     int[] stride)
                              throws java.lang.Exception

Throws:

java.lang.Exception

getGlobalAttribute

public HDFArray getGlobalAttribute(java.lang.String attr_name)
                            throws java.lang.Exception

Specified by:

getGlobalAttribute in interface MultiDimensionReader

Throws:

java.lang.Exception

getArrayAttribute

public HDFArray getArrayAttribute(java.lang.String array_name,
                                  java.lang.String attr_name)
                           throws java.lang.Exception

Specified by:

getArrayAttribute in interface MultiDimensionReader

Throws:

java.lang.Exception

close

public void close()
           throws java.lang.Exception

Specified by:

close in interface MultiDimensionReader

Throws:

java.lang.Exception

getVarMap

public java.util.Map<java.lang.String,ucar.nc2.Variable> getVarMap()

hasArray

public boolean hasArray(java.lang.String name)

hasDimension

public boolean hasDimension(java.lang.String name)

getNetCDFFile

public ucar.nc2.NetcdfFile getNetCDFFile()

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception

Throws:

java.lang.Exception