loci.formats.in
Class ImageIOReader

java.lang.Object
  extended by loci.formats.FormatHandler
      extended by loci.formats.FormatReader
          extended by loci.formats.in.ImageIOReader
All Implemented Interfaces:
loci.formats.IFormatHandler, loci.formats.IFormatReader, loci.formats.StatusReporter
Direct Known Subclasses:
JPEGReader, PNGReader

public abstract class ImageIOReader
extends loci.formats.FormatReader

ImageIOReader is the superclass for file format readers that use the javax.imageio package.

Source code:
Trac, SVN

Author:
Curtis Rueden ctrueden at wisc.edu

Field Summary
 
Fields inherited from class loci.formats.FormatReader
collectMetadata, core, filterMetadata, group, in, metadata, metadataStore, normalizeData, saveOriginalMetadata, series, THUMBNAIL_DIMENSION
 
Fields inherited from class loci.formats.FormatHandler
currentId, debug, debugLevel, format, statusListeners, suffixes
 
Fields inherited from interface loci.formats.IFormatReader
CAN_GROUP, CANNOT_GROUP, MUST_GROUP
 
Constructor Summary
ImageIOReader(String name, String suffix)
          Constructs a new ImageIOReader.
ImageIOReader(String name, String[] suffixes)
          Constructs a new ImageIOReader.
 
Method Summary
 void close()
           
 void close(boolean fileOnly)
           
protected  void initFile(String id)
           
 boolean isThisType(byte[] block)
           
 byte[] openBytes(int no, byte[] buf)
           
 BufferedImage openImage(int no)
           
 
Methods inherited from class loci.formats.FormatReader
addMeta, checkBytes, fileGroupOption, get16BitLookupTable, get8BitLookupTable, getChannelDimLengths, getChannelDimLengths, getChannelDimTypes, getChannelDimTypes, getCoreMetadata, getCoreMetadata, getCurrentFile, getDimensionOrder, getDimensionOrder, getEffectiveSizeC, getEffectiveSizeC, getImageCount, getImageCount, getIndex, getIndex, getMeta, getMetadata, getMetadata, getMetadataStore, getMetadataStore, getMetadataStoreRoot, getMetadataStoreRoot, getMetadataValue, getMetadataValue, getPixelType, getPixelType, getRGBChannelCount, getRGBChannelCount, getSeries, getSeries, getSeriesCount, getSeriesCount, getSizeC, getSizeC, getSizeT, getSizeT, getSizeX, getSizeX, getSizeY, getSizeY, getSizeZ, getSizeZ, getThumbSizeX, getThumbSizeX, getThumbSizeY, getThumbSizeY, getUsedFiles, getUsedFiles, getZCTCoords, getZCTCoords, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isInterleaved, isInterleaved, isLittleEndian, isLittleEndian, isMetadataCollected, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOrderCertain, isOriginalMetadataPopulated, isRGB, isRGB, isUsedFile, openBytes, openBytes, openBytes, openImage, openThumbBytes, openThumbBytes, openThumbImage, openThumbImage, setGroupFiles, setId, setMetadataCollected, setMetadataFiltered, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setSeries, setSeries
 
Methods inherited from class loci.formats.FormatHandler
addStatusListener, debug, getFormat, getStatusListeners, getSuffixes, isThisType, isThisType, removeStatusListener, setDebug, setDebugLevel, setId, status, status, status, trace, trace
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface loci.formats.IFormatHandler
getFormat, getSuffixes, isThisType, isThisType, setId
 
Methods inherited from interface loci.formats.StatusReporter
addStatusListener, getStatusListeners, removeStatusListener
 

Constructor Detail

ImageIOReader

public ImageIOReader(String name,
                     String suffix)
Constructs a new ImageIOReader.


ImageIOReader

public ImageIOReader(String name,
                     String[] suffixes)
Constructs a new ImageIOReader.

Method Detail

isThisType

public boolean isThisType(byte[] block)

openBytes

public byte[] openBytes(int no,
                        byte[] buf)
                 throws loci.formats.FormatException,
                        IOException
Throws:
loci.formats.FormatException
IOException

openImage

public BufferedImage openImage(int no)
                        throws loci.formats.FormatException,
                               IOException
Specified by:
openImage in interface loci.formats.IFormatReader
Overrides:
openImage in class loci.formats.FormatReader
Throws:
loci.formats.FormatException
IOException

close

public void close(boolean fileOnly)
           throws IOException
Specified by:
close in interface loci.formats.IFormatReader
Overrides:
close in class loci.formats.FormatReader
Throws:
IOException

close

public void close()
           throws IOException
Specified by:
close in interface loci.formats.IFormatHandler
Overrides:
close in class loci.formats.FormatReader
Throws:
IOException

initFile

protected void initFile(String id)
                 throws loci.formats.FormatException,
                        IOException
Overrides:
initFile in class loci.formats.FormatReader
Throws:
loci.formats.FormatException
IOException