loci.formats.in
Class OpenlabReader

java.lang.Object
  extended by loci.formats.FormatHandler
      extended by loci.formats.FormatReader
          extended by loci.formats.in.OpenlabReader
All Implemented Interfaces:
loci.formats.IFormatHandler, loci.formats.IFormatReader, loci.formats.StatusReporter

public class OpenlabReader
extends loci.formats.FormatReader

OpenlabReader is the file format reader for Openlab LIFF files.

Source code:
Trac, SVN

Author:
Melissa Linkert linkert at wisc.edu, Eric Kjellman egkjellman at wisc.edu, Curtis Rueden ctrueden at wisc.edu

Nested Class Summary
protected  class OpenlabReader.LayerInfo
          Helper class for storing layer info.
 
Field Summary
 
Fields inherited from class loci.formats.FormatReader
collectMetadata, core, filterMetadata, group, in, metadata, metadataStore, normalizeData, saveOriginalMetadata, series, THUMBNAIL_DIMENSION
 
Fields inherited from class loci.formats.FormatHandler
currentId, debug, debugLevel, format, statusListeners, suffixes
 
Fields inherited from interface loci.formats.IFormatReader
CAN_GROUP, CANNOT_GROUP, MUST_GROUP
 
Constructor Summary
OpenlabReader()
          Constructs a new OpenlabReader.
 
Method Summary
 void close()
           
 void close(boolean fileOnly)
           
protected  void initFile(String id)
           
 boolean isThisType(byte[] block)
           
 boolean isThisType(String name, boolean open)
           
 byte[] openBytes(int no)
           
 byte[] openBytes(int no, byte[] buf)
           
 
Methods inherited from class loci.formats.FormatReader
addMeta, checkBytes, fileGroupOption, get16BitLookupTable, get8BitLookupTable, getChannelDimLengths, getChannelDimLengths, getChannelDimTypes, getChannelDimTypes, getCoreMetadata, getCoreMetadata, getCurrentFile, getDimensionOrder, getDimensionOrder, getEffectiveSizeC, getEffectiveSizeC, getImageCount, getImageCount, getIndex, getIndex, getMeta, getMetadata, getMetadata, getMetadataStore, getMetadataStore, getMetadataStoreRoot, getMetadataStoreRoot, getMetadataValue, getMetadataValue, getPixelType, getPixelType, getRGBChannelCount, getRGBChannelCount, getSeries, getSeries, getSeriesCount, getSeriesCount, getSizeC, getSizeC, getSizeT, getSizeT, getSizeX, getSizeX, getSizeY, getSizeY, getSizeZ, getSizeZ, getThumbSizeX, getThumbSizeX, getThumbSizeY, getThumbSizeY, getUsedFiles, getUsedFiles, getZCTCoords, getZCTCoords, isFalseColor, isGroupFiles, isIndexed, isInterleaved, isInterleaved, isInterleaved, isInterleaved, isLittleEndian, isLittleEndian, isMetadataCollected, isMetadataComplete, isMetadataFiltered, isNormalized, isOrderCertain, isOrderCertain, isOriginalMetadataPopulated, isRGB, isRGB, isUsedFile, openBytes, openBytes, openImage, openImage, openThumbBytes, openThumbBytes, openThumbImage, openThumbImage, setGroupFiles, setId, setMetadataCollected, setMetadataFiltered, setMetadataStore, setNormalized, setOriginalMetadataPopulated, setSeries, setSeries
 
Methods inherited from class loci.formats.FormatHandler
addStatusListener, debug, getFormat, getStatusListeners, getSuffixes, isThisType, removeStatusListener, setDebug, setDebugLevel, setId, status, status, status, trace, trace
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface loci.formats.IFormatHandler
getFormat, getSuffixes, isThisType, setId
 
Methods inherited from interface loci.formats.StatusReporter
addStatusListener, getStatusListeners, removeStatusListener
 

Constructor Detail

OpenlabReader

public OpenlabReader()
Constructs a new OpenlabReader.

Method Detail

isThisType

public boolean isThisType(byte[] block)

openBytes

public byte[] openBytes(int no,
                        byte[] buf)
                 throws loci.formats.FormatException,
                        IOException
Throws:
loci.formats.FormatException
IOException

openBytes

public byte[] openBytes(int no)
                 throws loci.formats.FormatException,
                        IOException
Specified by:
openBytes in interface loci.formats.IFormatReader
Overrides:
openBytes in class loci.formats.FormatReader
Throws:
loci.formats.FormatException
IOException

close

public void close(boolean fileOnly)
           throws IOException
Specified by:
close in interface loci.formats.IFormatReader
Overrides:
close in class loci.formats.FormatReader
Throws:
IOException

isThisType

public boolean isThisType(String name,
                          boolean open)
Specified by:
isThisType in interface loci.formats.IFormatHandler
Overrides:
isThisType in class loci.formats.FormatHandler

close

public void close()
           throws IOException
Specified by:
close in interface loci.formats.IFormatHandler
Overrides:
close in class loci.formats.FormatReader
Throws:
IOException

initFile

protected void initFile(String id)
                 throws loci.formats.FormatException,
                        IOException
Overrides:
initFile in class loci.formats.FormatReader
Throws:
loci.formats.FormatException
IOException